Chromium Single Cell
Epi ATAC
Single cell profiling of open chromatin
10K nuclei/sample or 80K nuclei/chip
Run 8 samples in parallel
Why choose Epi ATAC
Assay specifications
Species
Mouse
Human
Rat
Non-human primate
Marine
Plant
InsectCompatible samples
Cell suspension
Nuclei suspension
Fresh tissue
Frozen tissue
OrganoidsMultiomics
Chromatin accessability
3' gene expressionCompatible instruments
Throughput options
Singleplex
10K nuclei/sample
80K nuclei/chip
8 samples/chipAssay components
Each experiment requires a chip, index kit, and core reagents. If you’re unsure what you need, use the experiment builder find the custom list of items required for your experiment.
Consumables
Nuclei Isolation (optional)
1000493
Chromium Nuclei Isolation Kit, 16rxns
Chip
1000162
Chromium Next GEM Chip H Single Cell Kit, 16 rxns
1000161
Chromium Next GEM Chip H Single Cell Kit, 48 rxns
Index Kit
1000212
Single Index Kit N Set A, 96 rxn
Core Reagents
1000406
Chromium Next GEM Single Cell ATAC Kit v2, 4 rxn
1000390
Chromium Next GEM Single Cell ATAC Kit v2, 16 rxn
Documents and resources
Product sheet
User guides
Videos
Single cell genomics in checkpoint blockade and CAR-T cell immunotherapy
A novel approach for single cell multi-omic analysis to identify regulatory signatures in cancer
Charting the map of neuronal fate specification using single cell transcriptomics and epigenomics
Data analysis
Cell Ranger ATAC
Cell Ranger ATAC is a set of free analysis pipelines for processing Chromium Single Cell ATAC data
Loupe Browser
Desktop application for Windows and MacOS that allows you to interactively visualize data.
Download Loupe BrowserFeatured publications
Mechanisms of action and resistance in histone methylation-targeted therapy
Nature, 2024
Makoto Yamagishi, et al.
Pharmacological induction of chromatin remodeling drives chemosensitization in triple-negative breast cancer
Cell Reports Medicine, 2024
Meisam Bagheri, et al.
Deciphering the spatiotemporal transcriptional and chromatin accessibility of human retinal organoid development at the single-cell level
iScience, 2024
Birthe Dorgau, et al.
Featured datasets
8k Adult Mouse Cortex Cells, ATAC v2, Chromium X
View dataset10k Human PBMCs, ATAC v2, Chromium X
View dataset10k 1:1 Mixture of Human GM12878 and Mouse EL4 Cells, ATAC v2, Chromium X
View datasetRelated products
Flex Gene Expression
Fixed RNA Profiling assay for comprehensive probe-based gene expression profiling with single cell resolution.
Universal 5' Gene Expression
5' gene expression alongside V(D)J repertoire profiling and antigen specificity of T and B cells.
Universal 3' Gene Expression
3' gene expression profiling at scale with single cell resolution.
Epi Multiome ATAC + Gene Expression
Combined profiling of 3' gene expression and chromatin accessibility from the same cell.