Two powerful chemistries to choose from
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Overview
Universal (3' / 5')
Whole transcriptome coverage
- Broadest multiomic options and diverse species compatibility
- De novo discovery of isoforms, long non-coding RNA, and more
- Highest cell recovery for low-input samples
Flex
Protein coding gene coverage
- Analyze a broad range of sample types including FFPE and whole blood
- Fix and batch flexible workflow
- Customized content based on experimental need
- Run up to 2.56M cells per chip
Chemistry
- Reverse transcription-based
- Probe-based
Compatible species
Agnostic
Human
Mouse- Other species with custom probes
Compatible samples
Cell suspensions
Nuclei suspensions
Flow-sorted cells
Fixed human PBMCs
Fresh tissue
Frozen tissue
DSP/Methanol-fixed
Organoids
- Cell suspensions
- Nuclei suspensions
- Flow-sorted cells
Fixed whole blood- Fresh tissue
- Frozen tissue
FFPE tissue
PFA-fixed tissue- Organoids
Multiomic capabilities
Gene expression
TCR & BCR sequencing
Antigen specificity
Cell surface protein
CRISPR screening
Chromatin accessibility
Gene expression
Cell surface protein
Intracellular protein- CRISPR screening
Cell & sample throughput
Great for pilot to mid-scale studies
Singleplex
20K cells/sample
160K cells/chip
Output: 8 samples/chip
On-chip multiplexing
5K cells/sample
40K cells/chip
Up to 4 samples/channel
Output: 8 samples/chip
Hashing
8 channels/chip
60K cells/channel
480K cells/chip
Output: 96+ samples/chip
Maximum scalability
Singleplex
20K cells/sample
160K cells/chip
Output: 8 samples/chip
In-line multiplex
20K cells/sample
2.56M cells/chip
Up to 16 samples/channel
Output: 128 samples/chip
Reveal the epigenomic landscape, cell by cell
Analyze chromatin accessibility at single cell resolution with our Epi kits, resolving cell types and states using genome-wide epigenetic profiles and gaining a deeper understanding of gene regulatory mechanisms.
Explore open chromatin regions with Assay for Transposase Accessible Chromatin (ATAC-seq) chemistry
Learn about Epi ATAC
Directly link 3’ gene expression and epigenomic profiles from the same nucleus with the Multiome assay
Learn about Epi Multiome
Profile up to 80,000 nuclei (1–8 samples) per chip
Ensure reliable assay performance with an all-in-one isolation kit that requires little to no optimization for most tissues
Learn about the Nuclei Isolation Kit
Compare our most popular Single Cell products
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