Flex Apex

Up to 384 samples a week in 96-well format
Exceptional performance with challenging samples
Why choose Apex
Running large-scale studies with minimized handling
Scaling at your pace with the ability to run partial plates
Detecting more genes with less sequencing
Assay specifications
Mouse
Human
Rat
Other species with custom probes
Species
Cell suspension
Nuclei suspension
Fresh tissue
Frozen tissue
FFPE tissue
PFA-fixed tissue
Flow-sorted cells
Fixed whole blood
Organoids
Compatible samples
Probe-based gene expression
Cell surface protein
Intracellular protein
CRISPR screening
Multiomics
Compatible instruments
20K cells/sample
160K cells/chip
8 samples/chip
Singleplex throughput options
20K cells/sample
8M cells/chip
3,072 samples/chip
Plate-based multiplexing throughput options
Shop reagents, kits & more
Flex Gene Expression
Each Flex experiment requires a sample prep kit, chip, index kit, and core reagents plus an optional feature barcoding kit. If you're unsure what you need, use the experiment builder find the custom list of items required for your experiment.

Documents and resources
Videos
Data analysis
Cell Ranger
Cell Ranger is a set of free analysis pipelines for processing Chromium Single Cell data.
Loupe Browser
Desktop application for Windows and MacOS that allows you to interactively visualize data.
Cloud Analysis
Cloud Analysis enables quick and easy access to Cell Ranger pipelines from your web browser.
Featured publications
Publications
Cancer Cell, 2024 Xin Huang, et al.
Cell Reports, 2024 Brendon D Parsons, et al.
Neuron, 2023 Josephine Fisher, et al.