Use Loupe to dive deeper into your Seurat analysis, no code required

LoupeR is an R package that creates a Loupe Browser file from a Seurat object. With LoupeR, seamlessly explore Seurat data in Loupe without command-line data wrangling.

Find differentially expressed genes in treatment vs. control experiments

Easily perform and iterate on multi-sample comparisons.

Rapidly visualize expression of your favorite genes

Quickly plot your differential expression results

Explore interactive heat maps and violin plots of differentially expressed genes.

Easily annotate cell types

Identify and annotate broad and fine-grained human cell types with Automated Cell Annotation.

Generate fast and interactive differential expression analyses

Reanalyze subsets of data to find new cell types

Narrow in on your cell types of interest or filter out low quality data.

Create high-resolution figures in a few clicks

Loupe Browser makes it easy to generate SVG and PNG formatted images to share in presentations or publications.

Characterize cells using advanced filters

Hone in on particular sets of barcodes by creating a custom set of rules with boolean operators.

Explore many modalities of data, including single cell V(D)J, ATAC, and spatial gene expression

Loupe Browser supports the full suite of 10x Genomics single cell and spatial datasets.