See what's new in the Xenium Analyzer instrument firmware, user interface, and onboard analysis.

Release Notes for Xenium Analyzer

Overview

Getting Started

Analysis

Algorithms

Example Datasets

Release Notes

Xenium Analyzer

Xenium Explorer

Xenium Ranger

Analysis Guides

Xenium Onboard Analysis 2.0

Xenium Onboard Analysis

A table of Xenium onboard analysis pipeline output files.

Outputs at a Glance

Overview of all Xenium onboard analysis pipeline output files.

Understanding Xenium Outputs

Overview of the interactive Xenium analysis summary output file metrics and plots.

Analysis Summary Overview

Troubleshooting guide for the Xenium analysis summary alerts.

Analysis Summary Alerts

Overview of the Zarr files included in the Xenium output bundle.

Explore Zarr files

Storing Xenium raw data for reanalysis or grant requirements

Archiving Xenium Data

The Xenium In Situ software suite is a set of software applications for analyzing and visualizing in situ gene expression data produced by the Xenium Analyzer. The Xenium Onboard Analysis pipeline enables simultaneous on-instrument data collection and analysis.

What is Xenium Onboard Analysis?

Learn about Xenium Onboard Analysis outputs, algorithms, and software compatibility.

Getting Started with Xenium Onboard Analysis

New to Xenium Onboard Analysis?

Storing Xenium raw data for reanalysis or grant requirements.

View the latest updates to Xenium Onboard Analysis algorithms.

View the latest updates to Xenium Onboard Analysis.

Powerful in situ profiling platform using curated panels, powerful visualization software, and easy-to-follow workflow.

Visualize data from Xenium In Situ solutions.

Reanalyze data from Xenium In Situ solutions.

Browse Q&As from the 10x Genomics support team.

A collection of introductions, tutorials, and blogs for data analysis beyond 10x Genomics software.