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Analysis

Analysis

Outputs at a Glance

A table of Xenium onboard analysis pipeline output files.

Understanding Xenium Outputs

Overview of all Xenium onboard analysis pipeline output files.

Analysis Summary Overview

Overview of the interactive Xenium analysis summary output file metrics and plots.

Analysis Summary Alerts

Troubleshooting guide for the Xenium analysis summary alerts.

Explore Zarr files

Overview of the Zarr files included in the Xenium output bundle.

Archiving Xenium Data

Storing Xenium raw data for reanalysis or grant requirements