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5k 1:1 Mixture of Fresh Frozen Human (GM12878) and Mouse (A20) Cells

Single Cell ATAC dataset analyzed using Cell Ranger ATAC 1.2.0

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1:1 mixture of human (GM12878) and mouse (A20) cells. This is a classic human-mouse mixture experiment to demonstrate single cell behavior.

  • ~7550 transposed nuclei were loaded.
  • 2,302 human and 2,159 mouse nuclei were recovered.
  • Sequenced on Illumina NovaSeq with approximately 43k read pairs per cell:
    • 50 bp Read 1
    • 8 bp i7 index (sample index)
    • 16 bp i5 index (10x Barcode)
    • 49 bp Read 2

This dataset is licensed under the Creative Commons Attribution license.