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Flash-Frozen Cortex, Hippocampus, and Ventricular Zone from Embryonic Mouse Brain (E18)

Epi ATAC dataset analyzed using Cell Ranger ATAC 1.2.0

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Flash-frozen cortex, hippocampus, and ventricular zone from embryonic mouse brain (E18). ~7,700 transposed nuclei were loaded and 4,580 nuclei were recovered.

Libraries were sequenced on Illumina NovaSeq with approximately 49k read pairs per cell:

  • 50 bp Read 1
  • 8 bp i7 index (sample index)
  • 16 bp i5 index (10x Barcode)
  • 49 bp Read 2

This dataset is licensed under the Creative Commons Attribution license.