10k Human PBMCs, 3' v3.1, Chromium Controller

Single Cell Gene Expression dataset analyzed using Cell Ranger 6.1.0

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Dataset overview

Output and supplemental files

Input files

Learn about Chromium analysis

Human peripheral blood mononuclear cells (PBMCs) of a healthy female donor aged 25-30 were obtained by 10x Genomics from AllCells.

Libraries were generated from ~16,000 cells (11,485 cells recovered) as described in the Chromium Single Cell 3' Reagent Kits User Guide (v3.1 Chemistry Dual Index) (CG000315 Rev C) using the Chromium Controller and sequenced on an Illumina NovaSeq 6000 to a read depth of approximately 30,000 mean reads per cell.

Paired-end, dual indexing Read 1: 28 cycles (16 bp barcode, 12 bp UMI) i5 index: 10 cycles (sample index) i7 index: 10 cycles (sample index) Read 2: 90 cycles (transcript)

Analysis Parameters Used: Run with --expect-cells=10000.

This dataset is licensed under the Creative Commons Attribution license.