Tutorials
Introduction
Learn about Loupe Browser and get oriented with its interface and features.
Assay Analysis
Learn about product-specific analysis capabilities to quickly gain insights from your 10x data.
Visium manual alignment for Space Ranger
Visium HD manual alignment
Identify fiducials, perform tissue selection and align CytAssist and microscope images for Visium HD. You will then export a JSON file for Space Ranger analysis.
Manual Fiducial Alignment and Tissue Detection (Visium v1/v2)
Manually identify the fiducials in your Visium image and select spots under tissue. You will then export a JSON file for Space Ranger analysis.
Manual CytAssist Image - Microscope Image Alignment (Visium v1/v2)
Align your CytAssist image and microscope image. After you complete this step, you can either export a JSON file for Space Ranger automated fiducial and tissue detection, or continue to Visium Fiducial Alignment.