https://assets.ctfassets.net/an68im79xiti/2pk4ZOO02GoL1zpicD6juW/8f73c17ac57cf579d2d35320d1406381/Module_1_Chromium_Next_GEM_Automated_Single_Cell_3____Library_Ed_1.pdf

https://assets.ctfassets.net/an68im79xiti/2NFAn4BBWQ3knGj7O41YUY/f743d2c86bc19835c2cdf1700055654c/Module_2_Chromium_Next_GEM_Automated_Single_Cell_3____Library_Ed_1.pdf

https://assets.ctfassets.net/an68im79xiti/2lXpjf2Tt6A18XTJEYwUyV/3d45fe8294225792f72bf59d8540cb54/Module_3_Chromium_Next_GEM_Automated_Single_Cell_3____Library_Ed_1.pdf

https://assets.ctfassets.net/an68im79xiti/77V9Q0afapByVNKqd5YpaC/5d52d7b8a91006f0d62f8e09e46693ee/1000212_1000213_1000215_Sample_Index_Kits.pdf

https://assets.ctfassets.net/an68im79xiti/5kimeLzDd5P1aNC7B5nusm/07ca490fadf87521b045f8c566484d29/1000137_1000148_Gel_Bead_Chromium_Next_GEM_Automated_Single_Cell_3__Library_Ed_1.pdf

https://assets.ctfassets.net/an68im79xiti/2pZBuOxL26l96WaLnlG7Lz/8d87a239aac30e22e5845a0cbd00de18/1000136_1000146_Chromium_Next_GEM_Chip_G_Automated_Single_Cell_Kit_Ed_1.pdf

https://assets.ctfassets.net/an68im79xiti/TFNZ8D9shHfFjLoOOK3lC/8dbce0422cb70d08f318a13c2e9eaf5c/2000048_Dynabeads___MyOne___SILANE_sds.pdf

https://assets.ctfassets.net/an68im79xiti/6uFrxS3qXQfw0JPLfmssaX/7b324d106777c721d0c92d8d1dd6e029/1000395_Chromium_Next_GEM_Automated_cDNA_Module_1_Ed1.pdf

https://assets.ctfassets.net/an68im79xiti/6mpO5NddNsLEnUETClYHYq/522093ad4c33872042d7d724242f61f9/1000396_Chromium_Next_GEM_Automated_cDNA_Module_2_Ed1.pdf

https://assets.ctfassets.net/an68im79xiti/6y6xyja8HV9EYk13Q9avID/50dd62c5383e1e81bd5ccde81b932119/1000399_Chromium_Automated_LibraryModule_1_Ed1.pdf

https://assets.ctfassets.net/an68im79xiti/3s3kKI3lNSBTdGJdNNJTrD/0d0e4919f084aa0f7c51dcc09825647a/1000397_1000398_ChromiumNext_GEM_Automated_cDNA_Module_3_Ed1.pdf

https://assets.ctfassets.net/an68im79xiti/3NUNa8LiFMbwcFI1luFbpc/33d2284fc4dd00d0d5c23ed6953a847c/1000400_Chromium_Automated_LibraryModule_2_Ed1.pdf

https://assets.ctfassets.net/an68im79xiti/6Zmkonhr1wVrR9pOyND0EH/d31ca1e372d7fb278eb3780ab7010917/1000401_Chromium_AutomatedLibrary_Module_3_Ed1.pdf

Provides safety information for Automated Chromium Single Cell 3' v3.1 assay reagents.

Chromium Next GEM Automated Single Cell 3ʹ Reagent Kits Safety Data Sheets (v3.1 Chemistry)

Construct a sequencing-ready single cell library by following our step-by-step User Guide / Protocol.

Library Construction

Chromium Single Cell Gene Expression provides single cell transcriptome 3' gene expression alongside the detection of surface protein expression or CRISPR edits in tens of thousands of cells. Scale experiments up or down with low-throughput and high-throughput solutions.

Plan ahead by referring to the list of equipment, kits, and reagents needed for Single Cell Gene Expression.

Experimental Design

Experimental Design & Planning

Prepare optimal single cell/nuclei suspension by following our Demonstrated Protocols.

Sample Prep

Refer to instrument-specific documents for seamless instrument operation.

Instruments

Use pre-designed or custom panels for targeted gene expression, followed by sequencing and data analysis.

Targeted

Targeted Gene Expression (Optional)

Sequence your single cell library as per our provided recommendations.

Sequencing

Analyze your single cell data using our pipelines, visualization, and Cloud Analysis tools.

Software Analysis

Chromium X Series

Single Cell Gene Expression

Overview

User Guides

Workflow Documentation

Additional Applications

Datasets

Videos

Publications

<>{'This assay requires Chromium X/iX instrument Firmware v2.0 or newer. Refer to the '}<Anchor href={'/support/instruments/chromium-x-series/chromium-x-series-firmware-update-procedure'}>{'Chromium X Series Firmware Update Procedure'}</Anchor>{' for details'}</>

Chromium Single Cell Gene Expression provides single cell transcriptome 3' gene expression alongside the detection of surface protein expression in tens of thousands of cells.

What is Single Cell Gene Expression?

Measure single cell gene and cell surface protein expression simultaneously.

Cell Surface Protein

Assess effects of CRISPR perturbations alongside single cell gene expression.

CRISPR

Multiplex up to 12 samples per channel for increased sample throughput.

Cell Multiplexing

Profile 2,000–20,000 cells per channel of the Chromium Next GEM Chip M (2,000– 60,000 cells per channel with CellPlex).

High Throughput (HT)

Seamless library construction capabilities on automated platforms.

3rd Party Automation

We provide resources from protocols, user guides, and free-to-use analysis tools.

Documentation

Access free, publicly available data from a number of different sample types generated with Chromium single cell solutions.

Explore how-to videos and training modules.

Chromium Next GEM Single Cell 3' v3.1 - Dual Index

Chromium Next GEM Single Cell 3' v3.1 - Single Index

Chromium Next GEM Single Cell 3' HT v3.1 - Dual Index

Find answers to common technical questions, from sample prep through data analysis, about Chromium single cell workflows.

Read key peer-reviewed research publications offering greater insights into biology, enabled by 10x Genomics products and technologies.

Chromium Next GEM Automated Single Cell 3ʹ Reagent Kits Safety Data Sheets (v3.1 Chemistry)

SDS,

Module 1_Chromium Next GEM Automated Single Cell 3’ Library_Ed 1.pdf

SDS,

Module 2_Chromium Next GEM Automated Single Cell 3’ Library_Ed 1.pdf

SDS,

Module 3_Chromium Next GEM Automated Single Cell 3’ Library_Ed 1.pdf

SDS,

1000212_1000213_1000215_Sample_Index_Kits.pdf

SDS,

1000137_1000148_Gel Bead_Chromium Next GEM Automated Single Cell 3' Library_Ed 1.pdf

SDS,

1000136_1000146_Chromium Next GEM Chip G Automated Single Cell Kit_Ed 1.pdf

SDS,

2000048_Dynabeads_MyOne_SILANE_sds.pdf

SDS,

1000395_Chromium Next GEM Automated cDNA Module 1_Ed1.pdf

SDS,

1000396_Chromium Next GEM Automated cDNA Module 2_Ed1.pdf

SDS,

1000399_Chromium Automated LibraryModule 1_Ed1.pdf

SDS,

1000397_1000398_ChromiumNext GEM Automated cDNA Module 3_Ed1.pdf

SDS,

1000400_Chromium Automated LibraryModule 2_Ed1.pdf

SDS,

1000401_Chromium AutomatedLibrary Module 3_Ed1.pdf

SDS,

Gel_Bead_Chromium_Next_GEM_Automated_Single_Cell_3_Library_Ed2.pdf