Aggregated PBMCs from a CMV seronegative donor

Universal 5' Gene Expression dataset analyzed using Cell Ranger 5.0.0

Assess data quality

View summary metrics to assess data quality and more.

Visualize and explore data

Discover differentially expressed genes, visualize your favorite genes, and explore your data with our visualization software.

Dataset overview

Output and supplemental files

Learn about Chromium analysis

Peripheral blood mononuclear cells (PBMCs) from a CMV seronegative donor were obtained from Astarte (donor 396, catalog #: 1001-3894AP18). Cells were labeled with a panel of 12 dCODE™ Dextramer® reagents (Immudex) and 17 TotalSeq™-C antibodies (BioLegend). See details in the Application Note “Redefining Cellular Phenotyping: Comprehensive Characterization and Resolution of the Antigen-Specific T Cell Response”.

Gene Expression, Cell Surface Protein/Immune Receptor Mapping, and TCR Amplified libraries were generated from sorted and unsorted cells (87% viable, expected cell recovery 9,100 for unsorted sample) as described in the Single Cell V(D)J Reagent Kits User Guide (CG000186 RevA) and sequenced on Illumina NovaSeq 6000 (Gene expression library) and HiSeq4000 (TCR Amplified and Cell Surface Protein/Immune Receptor Mapping libraries). Libraries from the sorted and unsorted samples were aggregated using Cell Ranger aggr.

To maintain donor anonymity, sequence data for this sample is not currently available.

This dataset is licensed under the Creative Commons Attribution license.