9k Brain Cells from an E18 Mouse
Single Cell Gene Expression dataset analyzed using Cell Ranger 2.1.0
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Dataset overview
Output and supplemental files
Input files
Learn about Chromium analysis
Cells from cortex, hippocampus and subventricular zone of an E18 mouse.
- 9,128 cells detected
- Sequenced on Illumina Hiseq4000 with approximately 42,000 reads per cell
- 26bp read1 (16bp Chromium barcode and 10bp UMI), 98bp read2 (transcript), and 8bp I7 sample barcode
- Analysis run with --expect-cells=10000
- Analysis run with reference version 1.2.0
This dataset is licensed under the Creative Commons Attribution license.