5k Cells from a combined cortex, hippocampus and subventricular zone of an E18 mouse (v3 chemistry)

Single Cell Gene Expression dataset analyzed using Cell Ranger 3.0.2

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Dataset overview

Output and supplemental files

Input files

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Cells from a combined cortex, hippocampus and sub ventricular zone of an E18 mouse (the same cells were used to generate 5k_neuron_v3_nextgem).

Libraries were prepared following the Chromium Single Cell 3ʹ Reagent Kits v3 User Guide (CG000183 RevA).

6,997 cells detected
Sequenced on Illumina NovaSeq with approximately 74,237 reads per cell
28bp read1 (16bp Chromium barcode and 12bp UMI), 91bp read2 (transcript), and 8bp I7 sample barcode
run with --expect-cells=5000

This dataset is licensed under the Creative Commons Attribution license.