10k 1:1 Mixture of Fresh Frozen Human (GM12878) and Mouse (A20) Cells

Single Cell ATAC dataset analyzed using Cell Ranger ATAC 1.0.1

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Dataset overview

Output and supplemental files

Input files

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1:1 mixture of human (GM12878) and mouse (A20) cells. This is a classic human-mouse mixture experiment to demonstrate single cell behavior.

~15,500 transposed nuclei were loaded.
5,593 human and 4,999 mouse nuclei were recovered.
Sequenced on Illumina NovaSeq with approximately 42k read pairs per cell.
- 50 bp Read 1
- 8 bp i7 index (sample index)
- 16 bp i5 (10x Barcode)
- 49 bp Read 2

This dataset is licensed under the Creative Commons Attribution license.