- Xenium Ranger provides a set of analysis pipelines that reprocess Xenium In Situ Gene Expression data.
- Start by choosing a computing option to set up and run Xenium Ranger.
Click the links below to read documentation on each pipeline. The xeniumranger subcommand line arguments are described on the Xenium Ranger command line arguments page.
| Pipeline | Description |
|---|---|
| xeniumranger relabel | Relabel decoded transcript gene labels. |
| xeniumranger rename | Rename sample metadata fields. |
| xeniumranger resegment | Rerun nucleus and cell segmentation using Xenium segmentation algorithms. |
| xeniumranger import-segmentation | Import 2D nucleus and/or cell segmentation results from community-developed tools or a prior Xenium Onboard Analysis output bundle to regenerate Xenium Onboard Analysis output files. |