Explore Xenium In Situ data from the tissue scale down to subcellular resolution with our interactive visualization tool.

Overview

Download Center

Getting Started

Xenium Explorer Demos

Tutorials

Release Notes

Xenium Onboard Analysis

Xenium Ranger

Xenium Panel Designer

Analysis Guides

Xenium Explorer

List of Xenium Explorer-compatible input files.

Xenium Explorer Inputs

Learn about Xenium Explorer and orient yourself to its interface and features.

Navigate Xenium Explorer

Image Layer

Cells Layer

Learn how to interact with transcript data.

Transcripts Layer

Find tips for examining cell segmentation, cell cluster assignment, and gene expression with Xenium Explorer.

Check Data Quality

Use Xenium Explorer lasso tools to narrow your focus to the cells that matter.

Export Regions of Interest

Save UI settings, transfer configurations to another window, and share settings with others.

Save and Share

Align post-Xenium images or import images aligned with third-party tools.

Image Alignment

Convert post-Xenium images to a format compatible with Xenium Explorer.

Converting Images

Introduction

Learn about Xenium Explorer and get oriented to its interface and features.

Interface and Features

Explore Xenium In Situ data, from tissue macrostructures to subcellular resolution, with our interactive visualization tool. Pinpoint the locations of specific transcripts, check cell segmentation, and inform downstream analysis.

What is Xenium Explorer?

Walk through Xenium Explorer features for investigating your in situ gene expression data.

Getting Started with Xenium Explorer

New to Xenium Explorer?

View the latest updates to Xenium Explorer.

Learn more about Xenium In Situ instrument analysis software.

Reanalyze data from Xenium In Situ solutions.

Browse Q&As from the 10x Genomics support team.

Access free, publicly available data generated with Xenium In Situ Gene Expression solutions.

Datasets

A collection of introductions, tutorials, and blogs for data analysis beyond 10x Genomics software.

Tutorials

New to Xenium Explorer? .css-1772f6j{color:#0071D9;}Getting Started with Xenium Explorer

Introduction

Interface and Features

Image Alignment

New to Xenium Explorer? Getting Started with Xenium Explorer