
<LinkableSection id={"v1-13"} title={"May 15, 2024"}>

Cloud Analysis is now available in the United Kingdom and European Economic Area (Austria, Belgium, Bulgaria, Croatia, Republic of Cyprus, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Iceland, Ireland, Italy, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Netherlands, Norway, Poland, Portugal, Romania, Slovakia, Slovenia, Spain and Sweden). Optional paid services are only available in the United States and Canada. See [Usage outside the U.S. and Canada](/support/software/cloud-analysis/latest/miscellaneous/CA-billing#usage-outside-us-canada) on our Billing page for more information.

</LinkableSection>

<LinkableSection id={"v1-12"} title={"April 17, 2024"}>
A bug that prevented the creation of a `cellranger vdj` analysis in de novo mode has been fixed. Additionally, the chemistry display for GEM-X Single Cell 5' Gene Expression libraries has been updated to accurately reflect the current chemistry version (v3).

</LinkableSection>

<LinkableSection id={"v1-11"} title={"April 8, 2024"}>
Cell Ranger v8.0.0 is now available as the default Cell Ranger version in Cloud Analysis! Cell Ranger v8.0.0 includes support for GEM-X datasets. Learn more about the new GEM-X kit on our [Introduction to GEM-X blog post](/blog/the-next-generation-of-single-cell-rna-seq-an-introduction-to-gem-x-technology) and read about the changes in Cell Ranger v8.0.0 in the [Cell Ranger Release Notes](/support/software/cell-ranger/latest/release-notes/cr-release-notes#v8-0-0).
</LinkableSection>

<LinkableSection id={"v1-10"} title={"Feb 15, 2024"}>

Cell Ranger v7.2.0 is now available in Cloud Analysis. Read about the changes in Cell Ranger v7.2.0 in the [Cell Ranger Release Notes](/support/software/cell-ranger/latest/release-notes/cr-release-notes#v7-2-0). Cloud Analysis does not support BEAM (Antigen Capture) libraries.

Flex multiplexing antibody experiments can now be analyzed by simply providing the sample barcode (labeled as BCxxx); the analysis pipeline can auto detect the antibody barcodes (ABxxx). You can still manually enter both sample and antibody barcodes if preferred. Please note that each barcode must be unique within an analysis; for example, you cannot use BC002 more than once in the same analysis.

</LinkableSection>

<LinkableSection id={"v1-1"} title={"May 25, 2023"}>

Cell Ranger v7.1.0 is now available in Cloud Analysis. Read about the changes in Cell Ranger v7.1.0 in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/7.1/release-notes). Cloud Analysis does not support BEAM (Antigen Capture) libraries.

</LinkableSection>

<LinkableSection id={"august-24-2022-a0a1ec"} title={"August 24, 2022"}>

Cell Ranger v7.0.1 and Cell Ranger ARC v2.0.2 are now available in Cloud Analysis. Read about the changes in Cell Ranger v7.0.1 in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/7.0/release-notes) and the changes in Cell Ranger ARC v2.0.2 in the [Cell Ranger ARC Release Notes](/support/software/cell-ranger-arc/latest).

</LinkableSection>

<LinkableSection id={"july-18-2022-09dbd0"} title={"July 18, 2022"}>

We are excited to expand the Cloud Instruments platform to support Visium CytAssist! Register your Visium CytAssist in order to access the latest firmware and documentation.

</LinkableSection>

<LinkableSection id={"may-23-2022-203f5e"} title={"May 23, 2022"}>

Cell Ranger version 7.0.0 is now available as the default Cell Ranger version in Cloud Analysis! Cell Ranger 7.0 includes support for Fixed RNA Profiling datasets. Learn more about the new Fixed RNA Profiling kit within the [Cell Ranger Documentation for Fixed RNA Profiling](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/7.0/what-is-frp) and read about the changes in Cell Ranger 7.0.0 in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/7.0/release-notes).

Additionally, you can now add custom library metadata to your `aggr` analyses in Cloud Analysis (e.g. lab or sample origin). These custom library annotations do not affect the analysis pipeline but can be visualized downstream in the Loupe Browser.

</LinkableSection>

<LinkableSection id={"april-27-2022-836a7d"} title={"April 27, 2022"}>

This update contains an exciting expansion: Cloud Analysis is now available in Canada!

We have also fixed a number of small bugs and added new functionality to the Web Uploader in this release.

</LinkableSection>

<LinkableSection id={"march-30-2022-946b71"} title={"March 30, 2022"}>

A [Web Uploader](https://support.10xgenomics.com/cloud-analysis/web-uploader) tool is now available on Cloud Analysis, enabling you to quickly upload FASTQ files using drag-and-drop functionality in your web browser, bypassing the command line interface (CLI) tool. The [CLI option](https://support.10xgenomics.com/cloud-analysis/uploading-fastqs) is still available, and may be preferable for large numbers of files.

</LinkableSection>

<LinkableSection id={"march-2-2022-5e0159"} title={"March 2, 2022"}>

Cell Ranger ARC 2.0.0 and 2.0.1 are now available on Cloud Analysis. This pipeline enables the analysis of 10x Genomics Single Cell Multiome datasets.

</LinkableSection>

<LinkableSection id={"january-19-2022-423cd6"} title={"January 19, 2022"}>

Analysis of Targeted Gene Expression data is now supported in Cloud Analysis! You are also able to aggregate datasets that were generated using our CellPlex Multiplexing Solution.

Finally, we added the ability to automatically generate commands to download output files using the 10x Genomics Cloud CLI.

Read more about the different download options available in Cloud Analysis on our [file download documentation](https://support.10xgenomics.com/cloud-analysis/file-download#download-options).

</LinkableSection>

<LinkableSection id={"december-22-2021-4200d0"} title={"December 22, 2021"}>

A new version of the 10x Genomics Cloud CLI is now available! This release (version 1.2.0) allows you to download your analysis output files directly through the command line. This download option contains benefits over the alternatives, such as the ability to resume failed or interrupted downloads.

Additionally, this version of the 10x Genomics Cloud CLI fixes a bug where FASTQ files that are larger than 50 GB would stall using the default command.

To download this update, visit the [10x Genomics Cloud CLI documentation](https://support.10xgenomics.com/cloud-analysis/txg-documentation).

</LinkableSection>

<LinkableSection id={"november-30-2021-5974d4"} title={"November 30, 2021"}>

You are now able to aggregate your Single Cell V(D)J libraries on Cloud Analysis! After your `cellranger vdj` analyses complete, select the 'Aggregate Multiple Analysis' button above the Analyses table to begin the setup process.

</LinkableSection>

<LinkableSection id={"october-28-2021-b5ef91"} title={"October 28, 2021"}>

Cell Ranger version 6.1.2 is now available as the default version in Cloud Analysis, while older versions remain available. This Cell Ranger release contains a number of bug fixes. Read about the changes in Cell Ranger 6.1.2 in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/6.1/release-notes).

We also made it easier to assign library and feature types to your FASTQ sets. Select any number of rows from the FASTQ table inside each project, then use the dropdown selector at the top of the table to assign values to multiple FASTQ sets at the same time!

</LinkableSection>

<LinkableSection id={"september-29-2021-eae43d"} title={"September 29, 2021"}>

We've updated Cloud Analysis to provide substantial speed and responsiveness improvements to projects with large numbers of FASTQ files.

</LinkableSection>

<LinkableSection id={"september-15-2021-331994"} title={"September 15, 2021"}>

The `cellranger multi` pipeline is now available on Cloud Analysis! Analyze your datasets that use cell multiplexing, or analyze datasets that include V(D)J repertoire, cell surface protein, antigen specificity and 5' gene expression data together in a single pipeline. Learn more about `cellranger multi` on the [Cell Ranger Documentation for Single Cell Gene Expression](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/multi) and on the [Cell Ranger Documentation for Single Cell Immune Profiling](https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/using/multi).

When you register your Chromium X/iX, you can now view useful summary statistics about your instrument usage on 10x Genomics Cloud!

</LinkableSection>

<LinkableSection id={"august-18-2021-0633bb"} title={"August 18, 2021"}>

Cell Ranger version 6.1.1 is now available as the default Cell Ranger version in Cloud Analysis. This release contains a bug fix for the `cellranger vdj` pipeline that would cause it to fail in certain circumstances.

You are now able to view and download detailed run log information for your Chromium X or Chromium iX if you choose to automatically upload logs from your device.

</LinkableSection>

<LinkableSection id={"august-9-2021-24e58a"} title={"August 9, 2021"}>

Cell Ranger version 6.1.0 with High Throughput Kit support is now available as the default Cell Ranger version in Cloud Analysis! Learn more about the new High Throughput Kit within the [Cell Ranger Documentation for HT](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-HT) and read about the changes in Cell Ranger 6.1.0 in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/6.1/release-notes).

We are excited to launch a newest service on the 10x Genomics Cloud: the 10x Genomics Cloud Instruments portal is available today at [https://cloud.10xgenomics.com/instruments/](https://cloud.10xgenomics.com/instruments). This platform is used to register your Chromium X, access the latest firmware and documentation, and soon you will be able to view and download your instrument's run logs if you choose to register your Chromium X/iX to your 10x Genomics Cloud account!

</LinkableSection>

<LinkableSection id={"june-23-2021-750340"} title={"June 23, 2021"}>

Cell Ranger version 6.0.2 is now available as the default Cell Ranger version in Cloud Analysis. Details about the changes in Cell Ranger 6.0.2 are available in the [Cell Ranger Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/6.0/release-notes). Older Cell Ranger versions, including versions 6.0.1 and 6.0.0, are still available for use in Cloud Analysis.

</LinkableSection>

<LinkableSection id={"june-2-2021-71f0aa"} title={"June 2, 2021"}>

We've added support for custom mouse panels with our Targeted Gene Expression product! Compatible with Single Cell Gene Expression and Immune Profiling assays, you can now design and order a fully custom mouse panel with our Custom Panel Designer!

</LinkableSection>

<LinkableSection id={"may-17-2021-559081"} title={"May 17, 2021"}>

Support for custom references is now available in Cloud Analysis! You can upload a custom reference transcriptome that you have created with either the `cellranger mkref` or `cellranger mkvdjref` pipelines and use this as a reference in your analyses. In the future, we will be expanding this feature and making it even easier for you to add non-human and non-mouse references to your 10x Genomics account for use in analyses.

To learn more about use of custom references in Cloud Analysis, please refer to our [documentation](https://support.10xgenomics.com/cloud-analysis/custom-references).

</LinkableSection>

<LinkableSection id={"april-14-2021-8b05a5"} title={"April 14, 2021"}>

This update includes the newest Cell Ranger release and support for additional pipelines and products.

- Cell Ranger version 6.0.1 is now available as the default Cell Ranger version in Cloud Analysis. This release includes a number of general improvements and bug fixes that are documented in the [Cell Ranger 6.0 Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/6.0/release-notes). Older Cell Ranger versions are still available to use.
- Aggregation of analyses including Feature Barcode data is now supported in Cloud Analysis.
- Single Cell 3' Gene Expression LT (Low Throughput) datasets are now officially supported in Cloud Analysis.

</LinkableSection>

<LinkableSection id={"march-31-2021-55f478"} title={"March 31, 2021"}>

You can now analyze your Feature Barcode data in Cloud Analysis!

- Upload your datasets that include Cell Surface Proteins, Antigen Specificity, or CRISPR Guide Capture, then setup and run [count (Feature Barcode)](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/feature-bc-analysis) in Cloud Analysis.
- Improved data management: delete FASTQ files, analyses, and whole projects from your account.
- We have added new output files with ongoing free storage and downloads. See the full list of files with free ongoing storage [here](https://support.10xgenomics.com/cloud-analysis/billing#saved-files).

</LinkableSection>

<LinkableSection id={"march-3-2021-377fff"} title={"March 3, 2021"}>

Cell Ranger 6.0 is now available in Cloud Analysis! This is the new default Cell Ranger version for count, aggr, reanalyze, and vdj pipelines. You can still select older versions when setting up your analysis. For full details about supported pipelines and versions in Cloud Analysis, read more [here](https://support.10xgenomics.com/cloud-analysis/supported-products). To learn more about what's new in Cell Ranger 6.0, please read the [Cell Ranger 6.0 Release Notes](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/6.0/release-notes).

</LinkableSection>

<LinkableSection id={"february-18-2021-4b238d"} title={"February 18, 2021"}>

We fixed an issue where the Cell Ranger version used to analyze data was the most recent version 5.0.1 but the user interface displayed version 5.0.0. We've also updated our Windows installation and usage instructions for the 10x Genomics Cloud CLI.

</LinkableSection>

<LinkableSection id={"february-11-2021-5b18cf"} title={"February 11, 2021"}>

Cloud Analysis is now available to all users in the United States! This update contains a number of exciting new features including:

- A beta version of the 10x Genomics Cloud CLI for Windows is now available. You can download the Windows versions [here](https://support.10xgenomics.com/cloud-analysis/txg-documentation).
- You are now able to download your FASTQ files. Select a row in the FASTQ table and click the download icon above to reveal `curl` and `wget` commands.

</LinkableSection>

<LinkableSection id={"january-20-2021-d47c7d"} title={"January 20, 2021"}>

We've added support for the `cellranger vdj` pipeline, and now have support for Cell Ranger versions 5.0, 4.0, & 3.1 in Cloud Analysis.

- Single Cell V(D)J libraries can now be analyzed on Cloud Analysis using the Cell Ranger V(D)J pipeline.
- Cell Ranger version 5.0 is the new default version for the count, aggr, reanalyze, and vdj pipelines. When you configure the settings for an analysis, you can still select versions 4.0 or 3.1 if you would like to use an older version of Cell Ranger.
- Improvements to the process of aggregating multiple analyses. Now, you can only select analyses that are eligible for aggregation. We filter out `reanalyze` and `aggr` analyses, which are not valid inputs to Cell Ranger aggr.

</LinkableSection>

<LinkableSection id={"december-9-2020-df8310"} title={"December 9, 2020"}>

We fixed a small issue in our design tool that resulted in some 121 nucleotide baits when designing for exogenous sequences, while the maximum length should be 120 nucleotides.

The issue should not have impacted any experimental results, but it could have impacted turnover time when ordering this panel through oligo providers such as IDT.

</LinkableSection>

<LinkableSection id={"november-30-2020-da6398"} title={"November 30, 2020"}>

We've addressed a few small bugs that have been identified thanks to our Early Access users.

- Fixed a bug in the 10x Genomics Cloud CLI that prevented users from attempting to retry failed uploads.
- Fixed a bug where users may encounter a blank page after transferring a project to another user.

</LinkableSection>

<LinkableSection id={"october-27-2020-a877d5"} title={"October 27, 2020"}>

We just announced compatibility of Targeted Gene Expression products with Visium Spatial Gene Expression! To go along with this announcement, we have also added a new Human Neuroscience Panel. You can now add on to this panel in a custom design with additional genes and exogenous sequences of interest. Pease note that fully custom panels are not supported for targeted experiments with Visium Spatial Gene Expression.

</LinkableSection>

<LinkableSection id={"october-19-2020-de9bbd"} title={"October 19, 2020"}>

Cloud Analysis is now available for Early Access users! Cloud Analysis will make it easier than ever to access and run 10x software, track and manage your experimental data and share that data with collaborators and researchers.

</LinkableSection>

<LinkableSection id={"recent-updates"} title={"Recent Updates"}>

<Flex padding={"1rem 0 2rem 0"} gap={"18px"} flexDirection={"column"}>
<WorkflowCard link={"/support/software/cloud-analysis/latest/release-notes/CA-release-notes"} title={"Recent Updates"} subtext={"Access release notes for recent updates of Cloud Analysis."} />
</Flex>

</LinkableSection>


Release Notes Archive


<LinkableSection id={"v1-19"} title={"November 21, 2024"}>

[Space Ranger v3.1.2](/support/software/space-ranger/downloads) is now available on Cloud Analysis to support Visium HD Spatial Gene Expression (Visium v1/v2 are not supported).

</LinkableSection>

<LinkableSection id={"v1-18"} title={"November 13, 2024"}>

[Space Ranger v3.1.1](/support/software/space-ranger/downloads) is now available on Cloud Analysis to support Visium HD Spatial Gene Expression (Visium v1/v2 are not supported).

</LinkableSection>

<LinkableSection id={"v1-17"} title={"September 25, 2024"}>

Cloud Analysis now offers a beta pipeline for generating [cell type annotations](/support/software/cloud-analysis/latest/tutorials/CA-cell-annotation-pipeline) from Cell Ranger `count` and `multi` outputs. The cell annotation pipeline will be available via command line interface in the next release of Cell Ranger.

</LinkableSection>

<LinkableSection id={"v1-16"} title={"September 3, 2024"}>

[Space Ranger v3.0.1](/support/software/space-ranger/downloads) is now available on Cloud Analysis to support Visium HD Spatial Gene Expression (Visium v1/v2 are not supported). The 10x Genomics Cloud CLI has been updated accordingly. Throughout this website and the Cloud Analysis interface, information about uploading FASTQ files has been generalized to refer to input files, which includes FASTQs, images, and potentially other files in the future. The `txg fastqs` CLI tool has been replaced with `txg files`; usage is otherwise nearly identical. Users of the `txg files` tool can now set the `-assumeyes` flag to automatically answer yes (`Y`) when prompted to continue an upload.

Please note that Visium HD Spatial Gene Expression is the only Visium product currently supported on 10x Genomics Cloud Analysis. Support for additional Visium assays will be added in the future.

</LinkableSection>

<LinkableSection id={"v1-15"} title={"July 08, 2024"}>

Cell Ranger v8.0.1 is now the default version in Cloud Analysis and includes various bug fixes, detailed in the [Cell Ranger Release Notes](/support/software/cell-ranger/latest/release-notes/cr-release-notes#v8-0-1). Please note that there is a known issue where duplicate pipelines may be displayed for certain analyses. If you encounter duplicate pipelines, disregard the one labeled "Not compatible with the selected input" and proceed with the other available selection.

</LinkableSection>

<LinkableSection id={"v1-14"} title={"June 20, 2024"}>

Cloud Analysis is now available globally with the exception of China, Hong Kong, and countries subject to U.S. embargo. Optional paid services are only available in the United States and Canada. See [Usage outside the U.S. and Canada](/support/software/cloud-analysis/latest/miscellaneous/CA-billing#usage-outside-us-canada) on our Billing page for more information.

</LinkableSection>

<LinkableSection id={"archive"} title={"Archive"}>

<Flex padding={"1rem 0 2rem 0"} gap={"18px"} flexDirection={"column"}>
<WorkflowCard link={ "/support/software/cloud-analysis/latest/release-notes/CA-release-notes-archive" } title={"Archive"} subtext={"Access release notes for past versions of Cloud Analysis."} />
</Flex>

</LinkableSection>


Recent Updates

10x Genomics Cloud Analysis is a platform for data management, analysis, and collaboration to simplify and accelerate the interpretation of 10x Genomics datasets. Cloud Analysis makes it easier than ever to run 10x analysis pipelines and manage your experimental data.

Overview

Tutorials

FAQs

Release Notes

Billing

Supported Products

Cloud Analysis

Learn how to create a free account using the two different log-in options.

Account creation

Upload input files into your projects using the Web Uploader.

Upload via Web Browser

Upload input files into your projects using the 10x Genomics Cloud CLI.

Upload via CLI

In addition to the pre-built human and mouse reference packages available in Cloud Analysis, you can upload and use your own custom references in your Cloud Analysis projects.

Upload a reference

After uploading input files into your project in Cloud Analysis, you are ready to analyze your data.

Create analyses

You are given four unique options for downloading your output files for each completed analysis. These options have certain benefits and limitations that make them appropriate for different circumstances.

Download output files

Cloud Analysis allows you to transfer projects from your user account to another user account.

Transfer projects

The 10x Genomics Cloud CLI is a command line interface (CLI) that allows you to upload input files to projects in your 10x Genomics account, create projects from the command line, and manage other tasks related to your 10x Genomics account.

CLI Documentation

10x Genomics Cloud Analysis is a platform for data management, analysis, and collaboration to simplify and accelerate the interpretation of supported 10x Genomics single cell and spatial datasets. Cloud Analysis makes it easier than ever to run 10x analysis pipelines and manage your experimental data.

What is Cloud Analysis?

<Text as={'p'} size={'small'} weight={'medium'}>If you are a member of a core lab or service provider, see <Anchor href={'/support/software/cloud-analysis/latest/getting-started/CA-guidance-for-cores'}>{'how Cloud Analysis can help improve your workflow.'}</Anchor><br/><br/>Explore our new <Anchor href={'/support/software/cloud-analysis/latest/tutorials/CA-cell-annotation-pipeline'}>{'beta pipeline for generating cell annotations'}</Anchor>, now available in Cloud Analysis! This feature will be fully integrated into the upcoming release of Cell Ranger.</Text>

Projects are where you upload data and run analysis pipelines. People typically create projects for each experiment. You can upload different samples to a single project.

Create Projects

Upload input files either directly from your web browser or via the 10x Genomics Cloud CLI.

Upload input files

After uploading, select the file sets that you want to work with. Then configure your pipeline settings and start the analysis.

Create Analyses

You can optionally receive an email when your analysis completes. When your results are ready, you can download the analysis outputs and explore your data using Loupe Browser or a variety of community-developed tools.

Download Results

10x Genomics pre-built human, mouse, and barnyard references are available. You may optionally upload your own custom references to use in the analyses on your account.

Optional workflow steps

We provide resources from protocols, user guides, and free-to-use analysis tools.

Find answers to frequently asked questions, including information about browser and operating system support.

We regularly add new features to 10x Genomics Cloud. Find details about the updates and improvements on this page.

Find information about our free usage policies and optional paid services.