Instructions for building the 10x Genomics Public Reference are documented separately.
Build Steps
2024-A reference transcriptomes for human (GRCh38) and mouse (GRCm39) are now available for download.
The pre-built 2024-A references utilize JASPAR vertebrate, non-redundant motifs that can be downloaded from JASPAR 2024.
A detailed list of changes to the transcriptome reference can be found on the corresponding Cell Ranger Reference Release Notes page.
Human GRCh38 (GENCODE v32/Ensembl98)Download
Mouse mm10 (GENCODE vM23/Ensembl98)Download