5k Peripheral Blood Mononuclear Cells (PBMCs) from a Healthy Donor (v1.0)

Epi ATAC dataset analyzed using Cell Ranger ATAC 1.2.0

Assess data quality

View summary metrics to assess data quality and more.

Visualize and explore data

Discover differentially expressed genes, visualize your favorite genes, and explore your data with our visualization software.

Dataset overview

Output and supplemental files

Input files

Learn about Chromium analysis

Peripheral blood mononuclear cells (PBMCs) from a healthy donor.

Libraries were prepared following the Chromium Single Cell ATAC Reagent Kits (User Guide CG000168 Rev B). All PBMC libraries (v1.1 chemistry vs. v1 chemistry at all cell loads) were prepared with the same nuclei preparation.

~7,700 transposed nuclei were loaded. ~5,000 expected nuclei recovered. 3,917 nuclei were detected
Sequenced on Illumina NovaSeq with approximately 27k read pairs per cell
- 50 bp Read 1
- 8 bp i7 index (sample index)
- 16 bp i5 (10x Barcode)
- 49 bp Read 2

This dataset is licensed under the Creative Commons Attribution license.