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5k MKN-45 Gastric Cancer Cell Line (100K Read Pairs Per Cell)

Single Cell CNV dataset analyzed using Cell Ranger DNA 1.1.0

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Overview: MKN-45 gastric cancer cell line provided by https://academic.oup.com/nargab/article/2/2/lqaa016/5805307.

  • Num Cells: 5219
  • Total Sequencing Reads: 600 million
  • Median estimated CNV resolution (in Mb): 7.89
  • Sequencer: Novaseq
  • Read Construct: 100 (R1), 8 (i7), 100 (R2)
  • Any special pipeline parameters: --maxreads=522000000

Please contact [email protected] if you are interested in downloading the BAM (837 GB) or FASTQ (723 GB) files.

This dataset is licensed under the Creative Commons Attribution license.