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4k PBMCs from a Healthy Donor

Single Cell Gene Expression dataset analyzed using Cell Ranger 2.0.1

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Peripheral blood mononuclear cells (PBMCs) from a healthy donor (same donor as pbmc8k). PBMCs are primary cells with relatively small amounts of RNA (~1pg RNA/cell).

  • 4,340 cells detected
  • Sequenced on Illumina Hiseq4000 with approximately 87,000 reads per cell
  • 26bp read1 (16bp Chromium barcode and 10bp UMI), 98bp read2 (transcript), and 8bp I7 sample barcode
  • Analysis run with --cells=5000

This dataset is licensed under the Creative Commons Attribution license.