1k Brain Cells from an E18 Mouse (v3 chemistry)
Universal 3' Gene Expression dataset analyzed using Cell Ranger 3.0.0
Visualize and explore data
Discover differentially expressed genes, visualize your favorite genes, and explore your data with our visualization software.
Dataset overview
Output and supplemental files
Input files
Learn about Chromium analysis
Cells from a combined cortex, hippocampus and sub ventricular zone of an E18 mouse (the same cells were used to generate neuron_1k_v2, neuron_10k_v3).
- 1,301 cells detected
- Sequenced on Illumina NovaSeq with approximately 71,000 reads per cell
- 28bp read1 (16bp Chromium barcode and 12bp UMI), 91bp read2 (transcript), and 8bp I7 sample barcode
- run with --expect-cells=1000
This dataset is licensed under the Creative Commons Attribution license.