All datasets

1k BJ with 1% MKN-45 Spike-In

Single Cell CNV dataset analyzed using Cell Ranger DNA 1.0.0

Assess data quality
View summary metrics to assess data quality and more.
View summary
Visualize and explore data
Discover differentially expressed genes, visualize your favorite genes, and explore your data with our visualization software.

Learn about Chromium analysis

Overview: BJ Fibroblast Euploid Cell Line with a 1% spike-in of cells from MKN-45 Gastric Cancer Cell Line. MKN45 cells were mixed with BJ cell in a ratio of 1:100 (BJ cells were cultured at 10X, passaged 3 times and grown to confluence to synchronize cell into a G1 maintaining state)

  • Num Cells: 1056
  • Total Sequencing Reads: 2.0 billion
  • Median Effective Reads per Mb: 370
  • Sequencer: Novaseq
  • Read Construct: 100 (R1), 8 (i7), 100 (R2)
  • Any special pipeline parameters: No

This dataset is licensed under the Creative Commons Attribution license.