Best practices for handling FFPE tissue samples and generating tissue slides. Protocol outlines deparaffinization, staining, and decrosslinking of tissue sections.

Tissue Prep & Staining for FFPE

Plan ahead by referring to the list of equipment, kits, and reagents needed for the Visium HD Spatial Gene Expression protocols.

Experimental Design

Experimental Planning and Design

Best practices for preparing and handling Fixed Frozen tissue samples and generating tissue slides. Protocol outlines rehydration, staining, and decrosslinking of tissue sections.

Tissue Prep & Staining for Fixed Frozen

Best practices for preparing and handling Fresh Frozen tissue samples and generating tissue slides. Protocol outlines fixation, staining, and permeabilization of tissue sections.

Tissue Prep & Staining for Fresh Frozen

For imaging hardware, general image acquisition and analysis guidelines, and example images.

Imaging

Find a list of probes targeting protein-coding genes in human or mouse transcriptome for the Visium HD Spatial Gene Expression assay.

Probe Sets

Construct a sequencing-ready Visium HD spatial library from your FFPE, Fresh Frozen, or Fixed Frozen tissue sections.

Library Construction

Refer to instrument-specific documents for seamless instrument operation.

Instruments

Sequence your Visium spatial library as per our provided recommendations.

Sequencing

Analyze your Visium spatial data using our pipelines and visualization tools.